Detailed information of SNP:
|
SNP ID:
sf1220192786(Gbrowse)
Chromosome: chr12 Position: 20192786 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1384 | 63.51% | 36.49% |
| All Indica | 770 | 46.88% | 53.12% |
| All Japonica | 493 | 95.13% | 4.87% |
| Aus | 66 | 22.73% | 77.27% |
| Indica I | 364 | 53.85% | 46.15% |
| Indica II | 205 | 37.07% | 62.93% |
| Indica Intermediate | 201 | 44.28% | 55.72% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 91 | 81.32% | 18.68% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220192786 | T->C | LOC_Os12g33460(LOC_Os12g33460.1) | INTRON |