Detailed information of SNP:
|
SNP ID:
sf1220194098(Gbrowse)
Chromosome: chr12 Position: 20194098 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1329 | 79.61% | 20.39% |
| All Indica | 735 | 71.16% | 28.84% |
| All Japonica | 487 | 97.33% | 2.67% |
| Aus | 57 | 49.12% | 50.88% |
| Indica I | 340 | 86.18% | 13.82% |
| Indica II | 200 | 50.50% | 49.50% |
| Indica Intermediate | 195 | 66.15% | 33.85% |
| Temperate Japonica | 333 | 98.80% | 1.20% |
| Tropical Japonica | 90 | 93.33% | 6.67% |
| Japonica Intermediate | 64 | 95.31% | 4.69% |
| Group VI/Aromatic | 11 | 45.45% | 54.55% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220194098 | A->C | LOC_Os12g33460(LOC_Os12g33460.1) | INTRON |