Detailed information of SNP:
|
SNP ID:
sf1220206655(Gbrowse)
Chromosome: chr12 Position: 20206655 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 96.58% | 3.42% |
| All Indica | 786 | 95.29% | 4.71% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 368 | 94.02% | 5.98% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 207 | 94.20% | 5.80% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220206655 | G->T | LOC_Os12g33500(LOC_Os12g33500.1) | Non-Synonymous SNP |