Detailed information of SNP:
|
SNP ID:
sf1220206682(Gbrowse)
Chromosome: chr12 Position: 20206682 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 96.65% | 3.35% |
| All Indica | 786 | 95.29% | 4.71% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 369 | 93.77% | 6.23% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 206 | 94.17% | 5.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220206682 | T->A | LOC_Os12g33500(LOC_Os12g33500.1) | Synonymous |