Detailed information of SNP:
|
SNP ID:
sf1220207944(Gbrowse)
Chromosome: chr12 Position: 20207944 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 90.80% | 9.20% |
| All Indica | 762 | 83.86% | 16.14% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 359 | 89.97% | 10.03% |
| Indica II | 205 | 80.00% | 20.00% |
| Indica Intermediate | 198 | 76.77% | 23.23% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220207944 | C->T | LOC_Os12g33500(LOC_Os12g33500.1) | INTRON |