Detailed information of SNP:
|
SNP ID:
sf1220208023(Gbrowse)
Chromosome: chr12 Position: 20208023 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1376 | 87.21% | 12.79% |
| All Indica | 763 | 79.42% | 20.58% |
| All Japonica | 491 | 97.56% | 2.44% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 363 | 87.05% | 12.95% |
| Indica II | 205 | 74.63% | 25.37% |
| Indica Intermediate | 195 | 70.26% | 29.74% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 89 | 88.76% | 11.24% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220208023 | A->G | LOC_Os12g33500(LOC_Os12g33500.1) | Non-Synonymous SNP |