Detailed information of SNP:
|
SNP ID:
sf1220208174(Gbrowse)
Chromosome: chr12 Position: 20208174 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 56.73% | 43.27% |
| All Indica | 784 | 83.55% | 16.45% |
| All Japonica | 492 | 11.18% | 88.82% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 368 | 85.87% | 14.13% |
| Indica II | 212 | 84.43% | 15.57% |
| Indica Intermediate | 204 | 78.43% | 21.57% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 91 | 42.86% | 57.14% |
| Japonica Intermediate | 66 | 13.64% | 86.36% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220208174 | G->A | LOC_Os12g33500(LOC_Os12g33500.1) | Non-Synonymous SNP |