Detailed information of SNP:
|
SNP ID:
sf1220208784(Gbrowse)
Chromosome: chr12 Position: 20208784 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 91.29% | 8.71% |
| All Indica | 770 | 85.19% | 14.81% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 360 | 92.50% | 7.50% |
| Indica II | 207 | 81.64% | 18.36% |
| Indica Intermediate | 203 | 75.86% | 24.14% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220208784 | A->G | INTERGENIC | None |