Detailed information of SNP:
|
SNP ID:
sf1220209046(Gbrowse)
Chromosome: chr12 Position: 20209046 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 75.85% | 24.15% |
| All Indica | 772 | 65.67% | 34.33% |
| All Japonica | 489 | 97.75% | 2.25% |
| Aus | 64 | 37.50% | 62.50% |
| Indica I | 362 | 56.63% | 43.37% |
| Indica II | 207 | 68.12% | 31.88% |
| Indica Intermediate | 203 | 79.31% | 20.69% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 88 | 90.91% | 9.09% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220209046 | G->A | INTERGENIC | None |