Detailed information of SNP:
|
SNP ID:
sf1220221353(Gbrowse)
Chromosome: chr12 Position: 20221353 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 63.72% | 36.28% |
| All Indica | 790 | 94.81% | 5.19% |
| All Japonica | 492 | 10.16% | 89.84% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 372 | 95.97% | 4.03% |
| Indica II | 209 | 94.26% | 5.74% |
| Indica Intermediate | 209 | 93.30% | 6.70% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 89 | 38.20% | 61.80% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220221353 | T->A | INTERGENIC | None |