Detailed information of SNP:
|
SNP ID:
sf1220222383(Gbrowse)
Chromosome: chr12 Position: 20222383 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 63.09% | 36.91% |
| All Indica | 788 | 94.04% | 5.96% |
| All Japonica | 496 | 10.89% | 89.11% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 371 | 94.88% | 5.12% |
| Indica II | 210 | 91.90% | 8.10% |
| Indica Intermediate | 207 | 94.69% | 5.31% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 39.78% | 60.22% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220222383 | G->A | INTERGENIC | None |