Detailed information of SNP:
|
SNP ID:
sf1220222476(Gbrowse)
Chromosome: chr12 Position: 20222476 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 63.53% | 36.47% |
| All Indica | 779 | 94.35% | 5.65% |
| All Japonica | 491 | 11.20% | 88.80% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 371 | 94.88% | 5.12% |
| Indica II | 205 | 92.20% | 7.80% |
| Indica Intermediate | 203 | 95.57% | 4.43% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 89 | 41.57% | 58.43% |
| Japonica Intermediate | 67 | 17.91% | 82.09% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220222476 | G->A | INTERGENIC | None |