Detailed information of SNP:
|
SNP ID:
sf1220226245(Gbrowse)
Chromosome: chr12 Position: 20226245 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1262 | 52.85% | 47.15% |
| All Indica | 685 | 82.19% | 17.81% |
| All Japonica | 469 | 6.40% | 93.60% |
| Aus | 62 | 80.65% | 19.35% |
| Indica I | 309 | 80.26% | 19.74% |
| Indica II | 194 | 82.99% | 17.01% |
| Indica Intermediate | 182 | 84.62% | 15.38% |
| Temperate Japonica | 327 | 1.83% | 98.17% |
| Tropical Japonica | 83 | 20.48% | 79.52% |
| Japonica Intermediate | 59 | 11.86% | 88.14% |
| Group VI/Aromatic | 9 | 44.44% | 55.56% |
| Intermediate | 37 | 54.05% | 45.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220226245 | G->A | INTERGENIC | None |