Detailed information of SNP:
|
SNP ID:
sf1220230312(Gbrowse)
Chromosome: chr12 Position: 20230312 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1305 | 87.97% | 12.03% |
| All Indica | 709 | 79.41% | 20.59% |
| All Japonica | 494 | 99.60% | 0.40% |
| Aus | 53 | 86.79% | 13.21% |
| Indica I | 337 | 83.38% | 16.62% |
| Indica II | 182 | 77.47% | 22.53% |
| Indica Intermediate | 190 | 74.21% | 25.79% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 36 | 94.44% | 5.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220230312 | T->A | LOC_Os12g33530(LOC_Os12g33530.1) | INTRON |