Detailed information of SNP:
|
SNP ID:
sf1220235132(Gbrowse)
Chromosome: chr12 Position: 20235132 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1358 | 63.55% | 36.45% |
| All Indica | 753 | 44.49% | 55.51% |
| All Japonica | 487 | 96.71% | 3.29% |
| Aus | 63 | 26.98% | 73.02% |
| Indica I | 354 | 52.54% | 47.46% |
| Indica II | 201 | 35.82% | 64.18% |
| Indica Intermediate | 198 | 38.89% | 61.11% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 87 | 85.06% | 14.94% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220235132 | T->C | INTERGENIC | None |