Detailed information of SNP:
|
SNP ID:
sf1220243153(Gbrowse)
Chromosome: chr12 Position: 20243153 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 91.05% | 8.95% |
| All Indica | 779 | 87.55% | 12.45% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 70.31% | 29.69% |
| Indica I | 361 | 82.55% | 17.45% |
| Indica II | 209 | 94.26% | 5.74% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220243153 | C->A | LOC_Os12g33560(LOC_Os12g33560.1) | Non-Synonymous SNP |