Detailed information of SNP:
|
SNP ID:
sf1220243172(Gbrowse)
Chromosome: chr12 Position: 20243172 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 86.78% | 13.22% |
| All Indica | 781 | 80.41% | 19.59% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 65 | 69.23% | 30.77% |
| Indica I | 371 | 77.90% | 22.10% |
| Indica II | 201 | 83.58% | 16.42% |
| Indica Intermediate | 209 | 81.82% | 18.18% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220243172 | C->T | LOC_Os12g33560(LOC_Os12g33560.1) | Synonymous |