Detailed information of SNP:
|
SNP ID:
sf1220243268(Gbrowse)
Chromosome: chr12 Position: 20243268 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 88.72% | 11.28% |
| All Indica | 782 | 83.76% | 16.24% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 65.15% | 34.85% |
| Indica I | 364 | 81.04% | 18.96% |
| Indica II | 208 | 87.02% | 12.98% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220243268 | C->T | LOC_Os12g33560(LOC_Os12g33560.1) | Synonymous |