Detailed information of SNP:
|
SNP ID:
sf1220256186(Gbrowse)
Chromosome: chr12 Position: 20256186 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 54.07% | 45.93% |
| All Indica | 790 | 78.61% | 21.39% |
| All Japonica | 490 | 14.49% | 85.51% |
| Aus | 66 | 54.55% | 45.45% |
| Indica I | 371 | 75.74% | 24.26% |
| Indica II | 210 | 80.48% | 19.52% |
| Indica Intermediate | 209 | 81.82% | 18.18% |
| Temperate Japonica | 333 | 1.50% | 98.50% |
| Tropical Japonica | 90 | 56.67% | 43.33% |
| Japonica Intermediate | 67 | 22.39% | 77.61% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220256186 | T->C | INTERGENIC | None |