Detailed information of SNP:
|
SNP ID:
sf1220271218(Gbrowse)
Chromosome: chr12 Position: 20271218 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1389 | 54.43% | 45.57% |
| All Indica | 779 | 83.31% | 16.69% |
| All Japonica | 492 | 5.49% | 94.51% |
| Aus | 65 | 78.46% | 21.54% |
| Indica I | 363 | 84.57% | 15.43% |
| Indica II | 209 | 81.82% | 18.18% |
| Indica Intermediate | 207 | 82.61% | 17.39% |
| Temperate Japonica | 334 | 0.30% | 99.70% |
| Tropical Japonica | 90 | 20.00% | 80.00% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220271218 | G->A | INTERGENIC | None |