Detailed information of SNP:
|
SNP ID:
sf1220279304(Gbrowse)
Chromosome: chr12 Position: 20279304 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 62.75% | 37.25% |
| All Indica | 787 | 96.32% | 3.68% |
| All Japonica | 489 | 4.50% | 95.50% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 368 | 96.74% | 3.26% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 208 | 96.15% | 3.85% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 89 | 20.22% | 79.78% |
| Japonica Intermediate | 66 | 3.03% | 96.97% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220279304 | A->C | INTERGENIC | None |