Detailed information of SNP:
|
SNP ID:
sf1220294868(Gbrowse)
Chromosome: chr12 Position: 20294868 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 97.87% | 2.13% |
| All Indica | 796 | 98.62% | 1.38% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 58 | 68.97% | 31.03% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220294868 | A->G | INTERGENIC | None |