Detailed information of SNP:
|
SNP ID:
sf1220307668(Gbrowse)
Chromosome: chr12 Position: 20307668 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 87.35% | 12.65% |
| All Indica | 796 | 85.18% | 14.82% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 372 | 84.14% | 15.86% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220307668 | T->C | INTERGENIC | None |