Detailed information of SNP:
|
SNP ID:
sf1220307703(Gbrowse)
Chromosome: chr12 Position: 20307703 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 88.39% | 11.61% |
| All Indica | 793 | 86.76% | 13.24% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 371 | 86.79% | 13.21% |
| Indica II | 212 | 80.19% | 19.81% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220307703 | T->C | INTERGENIC | None |