Detailed information of SNP:
|
SNP ID:
sf1220307766(Gbrowse)
Chromosome: chr12 Position: 20307766 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 89.53% | 10.47% |
| All Indica | 797 | 87.70% | 12.30% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 36.92% | 63.08% |
| Indica I | 374 | 88.24% | 11.76% |
| Indica II | 212 | 79.72% | 20.28% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220307766 | A->T | INTERGENIC | None |