Detailed information of SNP:
|
SNP ID:
sf1220307780(Gbrowse)
Chromosome: chr12 Position: 20307780 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 87.85% | 12.15% |
| All Indica | 792 | 86.99% | 13.01% |
| All Japonica | 486 | 98.35% | 1.65% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 370 | 88.11% | 11.89% |
| Indica II | 211 | 78.67% | 21.33% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 84 | 92.86% | 7.14% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220307780 | A->G | INTERGENIC | None |