Detailed information of SNP:
|
SNP ID:
sf1220307844(Gbrowse)
Chromosome: chr12 Position: 20307844 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 90.94% | 9.06% |
| All Indica | 790 | 89.37% | 10.63% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 59 | 42.37% | 57.63% |
| Indica I | 370 | 89.73% | 10.27% |
| Indica II | 211 | 82.46% | 17.54% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220307844 | A->T | INTERGENIC | None |