Detailed information of SNP:
|
SNP ID:
sf1220307895(Gbrowse)
Chromosome: chr12 Position: 20307895 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 63.69% | 36.31% |
| All Indica | 790 | 91.90% | 8.10% |
| All Japonica | 493 | 15.01% | 84.99% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 370 | 91.08% | 8.92% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 208 | 93.75% | 6.25% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 91 | 57.14% | 42.86% |
| Japonica Intermediate | 67 | 19.40% | 80.60% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220307895 | G->C | INTERGENIC | None |