Detailed information of SNP:
|
SNP ID:
sf1220310086(Gbrowse)
Chromosome: chr12 Position: 20310086 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1357 | 59.99% | 40.01% |
| All Indica | 757 | 88.90% | 11.10% |
| All Japonica | 486 | 12.14% | 87.86% |
| Aus | 63 | 90.48% | 9.52% |
| Indica I | 350 | 87.71% | 12.29% |
| Indica II | 205 | 91.22% | 8.78% |
| Indica Intermediate | 202 | 88.61% | 11.39% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 88 | 53.41% | 46.59% |
| Japonica Intermediate | 64 | 9.38% | 90.62% |
| Group VI/Aromatic | 11 | 9.09% | 90.91% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220310086 | A->G | LOC_Os12g33690(LOC_Os12g33690.1) | Non-Synonymous SNP |