Detailed information of SNP:
|
SNP ID:
sf1220311999(Gbrowse)
Chromosome: chr12 Position: 20311999 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 59.29% | 40.71% |
| All Indica | 793 | 88.78% | 11.22% |
| All Japonica | 488 | 10.86% | 89.14% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 370 | 88.65% | 11.35% |
| Indica II | 212 | 86.32% | 13.68% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 88 | 47.73% | 52.27% |
| Japonica Intermediate | 66 | 10.61% | 89.39% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220311999 | T->C | LOC_Os12g33690(LOC_Os12g33690.1) | Non-Synonymous SNP |