Detailed information of SNP:
|
SNP ID:
sf1220315753(Gbrowse)
Chromosome: chr12 Position: 20315753 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1355 | 59.63% | 40.37% |
| All Indica | 744 | 34.68% | 65.32% |
| All Japonica | 491 | 97.96% | 2.04% |
| Aus | 64 | 43.75% | 56.25% |
| Indica I | 345 | 39.42% | 60.58% |
| Indica II | 203 | 29.06% | 70.94% |
| Indica Intermediate | 196 | 32.14% | 67.86% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 89 | 92.13% | 7.87% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220315753 | G->A | LOC_Os12g33700(LOC_Os12g33700.1) | Synonymous |