Detailed information of SNP:
|
SNP ID:
sf1220322578(Gbrowse)
Chromosome: chr12 Position: 20322578 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 57.13% | 42.87% |
| All Indica | 768 | 32.55% | 67.45% |
| All Japonica | 496 | 95.36% | 4.64% |
| Aus | 63 | 44.44% | 55.56% |
| Indica I | 363 | 30.58% | 69.42% |
| Indica II | 204 | 38.73% | 61.27% |
| Indica Intermediate | 201 | 29.85% | 70.15% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220322578 | G->A | INTERGENIC | None |