Detailed information of SNP:
|
SNP ID:
sf1220332079(Gbrowse)
Chromosome: chr12 Position: 20332079 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 55.60% | 44.40% |
| All Indica | 770 | 81.30% | 18.70% |
| All Japonica | 494 | 12.55% | 87.45% |
| Aus | 64 | 73.44% | 26.56% |
| Indica I | 371 | 87.33% | 12.67% |
| Indica II | 202 | 77.23% | 22.77% |
| Indica Intermediate | 197 | 74.11% | 25.89% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 92 | 54.35% | 45.65% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220332079 | T->C | INTERGENIC | None |