Detailed information of SNP:
|
SNP ID:
sf1220332185(Gbrowse)
Chromosome: chr12 Position: 20332185 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 60.91% | 39.09% |
| All Indica | 778 | 85.60% | 14.40% |
| All Japonica | 488 | 17.62% | 82.38% |
| Aus | 63 | 80.95% | 19.05% |
| Indica I | 372 | 87.90% | 12.10% |
| Indica II | 203 | 85.71% | 14.29% |
| Indica Intermediate | 203 | 81.28% | 18.72% |
| Temperate Japonica | 333 | 2.70% | 97.30% |
| Tropical Japonica | 89 | 66.29% | 33.71% |
| Japonica Intermediate | 66 | 27.27% | 72.73% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220332185 | T->C | INTERGENIC | None |