Detailed information of SNP:
|
SNP ID:
sf1220332195(Gbrowse)
Chromosome: chr12 Position: 20332195 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1306 | 76.95% | 23.05% |
| All Indica | 708 | 64.27% | 35.73% |
| All Japonica | 487 | 93.43% | 6.57% |
| Aus | 61 | 95.08% | 4.92% |
| Indica I | 318 | 50.31% | 49.69% |
| Indica II | 199 | 77.39% | 22.61% |
| Indica Intermediate | 191 | 73.82% | 26.18% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 85 | 67.06% | 32.94% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 12 | 41.67% | 58.33% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220332195 | C->A | INTERGENIC | None |