Detailed information of SNP:
|
SNP ID:
sf1220332245(Gbrowse)
Chromosome: chr12 Position: 20332245 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1304 | 77.61% | 22.39% |
| All Indica | 716 | 64.94% | 35.06% |
| All Japonica | 483 | 95.03% | 4.97% |
| Aus | 54 | 88.89% | 11.11% |
| Indica I | 324 | 55.86% | 44.14% |
| Indica II | 199 | 73.87% | 26.13% |
| Indica Intermediate | 193 | 70.98% | 29.02% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 83 | 72.29% | 27.71% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220332245 | C->T | INTERGENIC | None |