Detailed information of SNP:
|
SNP ID:
sf1220339013(Gbrowse)
Chromosome: chr12 Position: 20339013 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 54.10% | 45.90% |
| All Indica | 798 | 35.46% | 64.54% |
| All Japonica | 496 | 85.08% | 14.92% |
| Aus | 66 | 45.45% | 54.55% |
| Indica I | 374 | 26.20% | 73.80% |
| Indica II | 213 | 52.58% | 47.42% |
| Indica Intermediate | 211 | 34.60% | 65.40% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 93 | 38.71% | 61.29% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220339013 | C->G | INTERGENIC | None |