Detailed information of SNP:
|
SNP ID:
sf1220350118(Gbrowse)
Chromosome: chr12 Position: 20350118 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 50.00% | 50.00% |
| All Indica | 794 | 72.54% | 27.46% |
| All Japonica | 494 | 9.72% | 90.28% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 372 | 81.18% | 18.82% |
| Indica II | 213 | 55.40% | 44.60% |
| Indica Intermediate | 209 | 74.64% | 25.36% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 91 | 31.87% | 68.13% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220350118 | T->A | INTERGENIC | None |