Detailed information of SNP:
|
SNP ID:
sf1220351674(Gbrowse)
Chromosome: chr12 Position: 20351674 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 56.98% | 43.02% |
| All Indica | 787 | 85.77% | 14.23% |
| All Japonica | 493 | 6.90% | 93.10% |
| Aus | 63 | 93.65% | 6.35% |
| Indica I | 366 | 77.60% | 22.40% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 90 | 20.00% | 80.00% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220351674 | G->C | INTERGENIC | None |