Detailed information of SNP:
|
SNP ID:
sf1220352040(Gbrowse)
Chromosome: chr12 Position: 20352040 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 93.33% | 6.67% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 487 | 82.34% | 17.66% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 78.42% | 21.58% |
| Tropical Japonica | 91 | 91.21% | 8.79% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220352040 | T->C | INTERGENIC | None |