Detailed information of SNP:
|
SNP ID:
sf1220365409(Gbrowse)
Chromosome: chr12 Position: 20365409 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 57.36% | 42.64% |
| All Indica | 764 | 85.34% | 14.66% |
| All Japonica | 489 | 9.20% | 90.80% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 357 | 80.11% | 19.89% |
| Indica II | 206 | 90.29% | 9.71% |
| Indica Intermediate | 201 | 89.55% | 10.45% |
| Temperate Japonica | 332 | 1.20% | 98.80% |
| Tropical Japonica | 91 | 34.07% | 65.93% |
| Japonica Intermediate | 66 | 15.15% | 84.85% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220365409 | T->C | INTERGENIC | None |