Detailed information of SNP:
|
SNP ID:
sf1220376072(Gbrowse)
Chromosome: chr12 Position: 20376072 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 71.14% | 28.86% |
| All Indica | 788 | 98.73% | 1.27% |
| All Japonica | 496 | 23.19% | 76.81% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 369 | 98.37% | 1.63% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 208 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 93 | 83.87% | 16.13% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220376072 | T->G | INTERGENIC | None |