Detailed information of SNP:
|
SNP ID:
sf1220376154(Gbrowse)
Chromosome: chr12 Position: 20376154 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 79.73% | 20.27% |
| All Indica | 793 | 80.83% | 19.17% |
| All Japonica | 495 | 82.22% | 17.78% |
| Aus | 65 | 63.08% | 36.92% |
| Indica I | 372 | 67.74% | 32.26% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 33.33% | 66.67% |
| Japonica Intermediate | 67 | 71.64% | 28.36% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220376154 | C->A | INTERGENIC | None |