Detailed information of SNP:
|
SNP ID:
sf1220376705(Gbrowse)
Chromosome: chr12 Position: 20376705 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 70.51% | 29.49% |
| All Indica | 795 | 97.61% | 2.39% |
| All Japonica | 496 | 22.98% | 77.02% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 371 | 97.30% | 2.70% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 93 | 82.80% | 17.20% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220376705 | C->G | LOC_Os12g33840(LOC_Os12g33840.1) | Synonymous |