Detailed information of SNP:
|
SNP ID:
sf1220378901(Gbrowse)
Chromosome: chr12 Position: 20378901 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 78.39% | 21.61% |
| All Indica | 776 | 71.13% | 28.87% |
| All Japonica | 495 | 91.92% | 8.08% |
| Aus | 66 | 66.67% | 33.33% |
| Indica I | 362 | 65.19% | 34.81% |
| Indica II | 207 | 76.81% | 23.19% |
| Indica Intermediate | 207 | 75.85% | 24.15% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 92 | 71.74% | 28.26% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220378901 | A->T | LOC_Os12g33850(LOC_Os12g33850.1) | Non-Synonymous SNP |