Detailed information of SNP:
|
SNP ID:
sf1220380236(Gbrowse)
Chromosome: chr12 Position: 20380236 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1243 | 78.44% | 21.56% |
| All Indica | 664 | 68.07% | 31.93% |
| All Japonica | 478 | 95.61% | 4.39% |
| Aus | 53 | 56.60% | 43.40% |
| Indica I | 299 | 84.28% | 15.72% |
| Indica II | 190 | 47.89% | 52.11% |
| Indica Intermediate | 175 | 62.29% | 37.71% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 78 | 78.21% | 21.79% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 10 | 100.00% | 0.00% |
| Intermediate | 38 | 68.42% | 31.58% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220380236 | T->C | LOC_Os12g33850(LOC_Os12g33850.1) | Non-Synonymous SNP |