Detailed information of SNP:
|
SNP ID:
sf1220380487(Gbrowse)
Chromosome: chr12 Position: 20380487 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1324 | 62.16% | 37.84% |
| All Indica | 728 | 88.60% | 11.40% |
| All Japonica | 480 | 17.50% | 82.50% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 328 | 83.23% | 16.77% |
| Indica II | 203 | 92.61% | 7.39% |
| Indica Intermediate | 197 | 93.40% | 6.60% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 85 | 72.94% | 27.06% |
| Japonica Intermediate | 60 | 18.33% | 81.67% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220380487 | G->C | LOC_Os12g33850(LOC_Os12g33850.1) | Non-Synonymous SNP |