Detailed information of SNP:
|
SNP ID:
sf1220380775(Gbrowse)
Chromosome: chr12 Position: 20380775 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 85.34% | 14.66% |
| All Indica | 789 | 77.31% | 22.69% |
| All Japonica | 495 | 97.37% | 2.63% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 369 | 90.51% | 9.49% |
| Indica II | 210 | 56.67% | 43.33% |
| Indica Intermediate | 210 | 74.76% | 25.24% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220380775 | T->C | LOC_Os12g33850(LOC_Os12g33850.1) | Non-Synonymous SNP |