Detailed information of SNP:
|
SNP ID:
sf1220381620(Gbrowse)
Chromosome: chr12 Position: 20381620 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 87.63% | 12.37% |
| All Indica | 796 | 80.65% | 19.35% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 372 | 94.89% | 5.11% |
| Indica II | 213 | 58.22% | 41.78% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220381620 | A->G | LOC_Os12g33850(LOC_Os12g33850.1) | INTRON |