Detailed information of SNP:
|
SNP ID:
sf1220399001(Gbrowse)
Chromosome: chr12 Position: 20399001 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 90.75% | 9.25% |
| All Indica | 787 | 84.63% | 15.37% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 98.12% | 1.88% |
| Indica II | 205 | 61.95% | 38.05% |
| Indica Intermediate | 209 | 82.78% | 17.22% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220399001 | G->A | INTERGENIC | None |